About

Launched: 2026
Record Updated: Sep 30, 2026
Computing library
Digital asset management system
Repository software
The APCC TRE-in-a-Box is a containerized governance-aware platform for conducting secure, reproducible research with sensitive data. It organizes work around datastore-backed studies, datasets, datafiles, transformations, and recorded governance decisions. PostgreSQL holds authoritative metadata, while lake storage uses Parquet and Arrow-oriented tabular workflows. A trusted runtime resolves configuration and secrets, authenticates users, enforces authorization, and orchestrates governed compute. User code runs against explicitly authorized inputs; outputs remain controlled resources until an approved export permits release. Browser, command-line interfaces and language specific (Python, Julia, R) expose stable control-plane operations without leaking infrastructure authority. Together, these controls preserve provenance, accountability, isolation, and automation across research workflows.

Domain Relevance

  • Basic medicine
  • Computer and information sciences
  • Health sciences
  • Other social sciences

Mission

The mission of the APCC is to enhance African population cohorts through a consortium to harness the continent's unique diversity and research capabilities, thereby facilitating scientific breakthroughs, building the African evidence base, and strengthening policy and practice towards attaining equitable universal health coverage.

Key Achievements

The system is currently under development. A throw-away prototype was completed in May 2026. In November 2026 a 10-cohort pilot test will start.

Technical Attributes

Maintenance Status

Actively Maintained

Open Code Repository

Implemented

Technical Documentation

Implemented

Code License

Implemented

Open API

In Progress

Open Product Roadmap

In Progress

Technical Attribute Statements

Programming Languages

  • rust

Technology Readiness Level

  • System prototype demonstration in operational environment

Code Licenses Used

  • MIT License

Content Licensing

  • Creative commons licenses

Standards

Metadata

  • Data Documentation Initiative Codebook
  • DataCite metadata schema
  • JSON
Other:
G4GH APIs

Persistent Identifier

  • ORCiD

Security

SATRE

Integrations

  • DataCite

Community Engagement

Community Engagement

Implemented

Community Statements

User Contribution Pathways

  • Contribute to code
  • Contribute to documentation
  • Contribute to education or training
  • Contribute to governance
  • Contribute to peer reviews
  • Contribute to user research or user testing
  • Contribute to working groups or interest groups

Community Engagement Activities

  • Annual meetings
  • Interest, working, user, or advisory groups
  • Mailing lists and discussion forums (including Slack)
  • Social media
  • Staff roles with responsibility for community engagement
  • Webinars and training

Engagement with Values Frameworks

  • CARE Principles for Indigenous Data Governance
  • FAIR Guiding Principles for Scientific Data Management and Stewardship
  • UN Sustainable Development Goals

Funding

Primary Funding Source

  • Contributions

Revenue Sources

  • Grants (public)

Funding Needs

To roll out the solution to more than the initial 10 pilot installations. Sponsorships for datathons using the data on the TREs.

Fiscal Host

Science for Africa Foundation